karyogram — karyogram • gTrack

Returns gTrack displaying band pattern for hg18 or hg19 karyotype

karyogram(
  file = NULL,
  hg19 = TRUE,
  bands = TRUE,
  arms = TRUE,
  tel.width = 2e+06,
  ...
)

Arguments

hg19: logical scalar flag, if T returns gTrack for hg19
bands: logical scalar, if T returns gTrack with colored giemsa bands
arms: logical scalar, if T and bands F, returns chromosome arms with different colors and centromeres and telomeres marked, if arms is F and bands F returns chromosomes, each with a different color
tel.width: numeric scalar, specifies telomere width in bases (only relevant if arms = T, bands = F)
...: Additional arguments sent to the gTrack constructor

Marcin Imielinski